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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015801567.1_cds_XP_016475889.1_6744
CDS Infomation

[gene=LOC107797495] [db_xref=GeneID:107797495] [protein=cysteine--tRNA ligase 2, cytoplasmic-like isoform X2] [protein_id=XP_016475889.1] [location=join(17915..17997,23718..23781,23956..24117,24610..24780,24853..25137,25216..25341,25508..25921,26287..26751)] [gbkey=CDS]
Sequence

ATGTACATATGTGGTGTTAGCCCCTATGACTTCAGTCACATCGGCCATGCCCGTTCATAT
GTCGCCTTCGACGTTCTCTACAGATATCTGAAATACTTGAGATATGATGTTGTGTATGTG
TGCAACTTCTCAGATGTAGATGAAAAGATAATTCGTCGGGCTAATGAGTTTGGAGAGGAC
CCAATAGCTTTGAGTGGTCGATACTGCCAGGAGTTTCAAAAAGACATGGATGATCTCCAA
TGCCTCCCACCAACTCATCAACCTCGTGTTAGTGAGCATATGGAGGAGATTAAGGAAATG
ATAGCTAAGGTAATGACTAATGGCTATGCCTATACAGTTGATGGAGATGTTTATTTCTCT
GTCGATAGTTTTCCAGAGTATGGTCGCCTATCTGGACGAAAATTAGAAGATAATCGAGCT
GGAGGACGCCTTGCAGTTGATTCAAGAAAGCGAAATCCTGCTGACTTTGCCTTGTGGAAG
GCTGCAAAGCCTGGTGAACCAAGTTGGGACAGCCCCTGGGGTCGTGGAAGACCAGGTTGG
CATATAGAATGCAGTGCAATGAGTGCCTACTATTTAACACATTCTTTTGATATACATGGT
GGTGGAATGGACTTGATTTTTCCTCACCATGAGAATGAGATTGCCCAGAATTGCGCTGCT
TGTGGCCCGGAGAGTAATGTTAGCTGCTGGATACATAATGGTTTTGTTACCATAGATGAC
GAGAAAATGTCGAAATCATTGGGGAACTTCTTCACTATACGTGAGGTTACTCAATTGTAC
CATCCCATTGCATTGAGGTACTTCTTGTTGGGGACGCACTACCGATCTCCTGTTAATTAC
TCAATATCACAGATAGAAATTGCTTCAGAATCTGTGTATTACATTTATCAGACCTTACAT
GATAATGAAGAAGCTTTGTCTGCTTTCCAACAAGGAACCGAAACAGAAACAAAAGTAAAG
GGGGTGCGTGTTAGCCCTCAGGCCCAAGAATGCATCAGCGAGTTGCGTAATGAGTTGGAG
ATAAAGCTTTCTGATGATTTGCATACACCTGCAATTTTAAATACTGCTCTTCAAGAAGCC
CTTAGACTTATGAATAGCTATGTGAACATGCTGAAGGTGGGAACTCTACCTTCTTTTTTC
ACTTCTGCTCATGGCTGGTGTGGTACAAATGTTCCATTATCTCTTGATACTTTCCAGAAA
AAGCAGCAACAGTTATCTGTTATTCTGTACCTAACCGAGCTCCAGAAAGAAGTGAAGGCA
GTGCTAGATGTCCTTGGATTGCTCCTTGGTTCAACTTGTGCTGAGGTTTTGCAGCAGTTT
AAAGAGAGAGCACTGAAAAGGGCTGACTTGACGGAGGAAGATATTTTGCGTGCAATAGAG
GAAAGAGCACTAGCAAGGAAAAATAAGGAGTTTGCAAGAAGCGATCAGATTAGAACAGAT
TTAGTGGCCAAGGGAATTGCTTTAATGGACATAGGGACAGAAACAGTTTGGAGGCCTTGT
GTAAGACGTGGACAAGAACAGCCTGCCCCGCCAGCTCAACTTGAGCAGTCTGCTGCAGCA
GTGCAAAAAGAACCGCCTGTTGCACCATCTCAACTAAAACAGTCCGCTGCAGCACGGCAA
AAAGAACAGCCTGCTGCGTCACTTCAACCACCACCTTGGTCATGCGCATTGGCAATTAGT
AAAGAGGATCATGACATATCTGAAGGAACTACGGATTACACACTTAGTCACCAGGGCAAC
AAATATCTTGAGATTAATTGGACACAATGA

Peptide Sequence

PEP ID

XP_016475889.1
PEP Infomation

PREDICTED: cysteine--tRNA ligase 2, cytoplasmic-like isoform X2 [Nicotiana tabacum]
Sequence

MYICGVSPYDFSHIGHARSYVAFDVLYRYLKYLRYDVVYVCNFSDVDEKIIRRANEFGED
PIALSGRYCQEFQKDMDDLQCLPPTHQPRVSEHMEEIKEMIAKVMTNGYAYTVDGDVYFS
VDSFPEYGRLSGRKLEDNRAGGRLAVDSRKRNPADFALWKAAKPGEPSWDSPWGRGRPGW
HIECSAMSAYYLTHSFDIHGGGMDLIFPHHENEIAQNCAACGPESNVSCWIHNGFVTIDD
EKMSKSLGNFFTIREVTQLYHPIALRYFLLGTHYRSPVNYSISQIEIASESVYYIYQTLH
DNEEALSAFQQGTETETKVKGVRVSPQAQECISELRNELEIKLSDDLHTPAILNTALQEA
LRLMNSYVNMLKVGTLPSFFTSAHGWCGTNVPLSLDTFQKKQQQLSVILYLTELQKEVKA
VLDVLGLLLGSTCAEVLQQFKERALKRADLTEEDILRAIEERALARKNKEFARSDQIRTD
LVAKGIALMDIGTETVWRPCVRRGQEQPAPPAQLEQSAAAVQKEPPVAPSQLKQSAAARQ
KEQPAASLQPPPWSCALAISKEDHDISEGTTDYTLSHQGNKYLEINWTQ

Transcript Sequence

Gene sequence data has not been registered.